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Can bioinformatics be used by students to research and visualize the genetic disease process?

Kathleen Gabric (kgabric@hinsdale86.org) (ready to use)

Coauthors
Steven Moore (samoore@students.uiuc.edu)


ASK
Partner Projects
Biology Student Workbench

Subject Areas
Science

Grade Levels
9, 10, 11, 12, Undergraduate

Unit Keywords
genes, DNA, genetic disease, OMIM, bioinformatics, proteins, GK-12

Open Directory Category
http://dmoz.org/Health/Conditions_and_Diseases/Genetic_Disorders/

Rationale of the Unit
This project is designed to help students understand the disease process: DNA--->Genes--->Proteins--->Genetic Disease State.

  INVESTIGATE Go to Topgo to top
Background and Resources
Student Project Instructions
http://www.district86.k12.il.us/central/faculty/k-gabric/GeneticProject.htm

WEB SITES -- sites for exploration and interaction.
Human Genome Landmarks
.....http://www.ornl.gov/hgmis/posters/chromosome/
NIH's Gene and Diseases
.....http://www.ncbi.nlm.nih.gov/disease/
The Genome Database
.....http://gdbwww.gdb.org/
YAHOO's Genetic Diseases
http://dir.yahoo.com/Health/Diseases_and_Conditions/Genetic_Disorders/
Chromosome Database
....http://www.bioscience.org/urllists/chromos.htm

  CREATE Go to Topgo to top
Activities and Open-ended problems
ACTIVITIES OUTSIDE OF CLASS / INDEPENDENT WORK

Each student was assigned a human chromosome to research. They began at the Human Genetic Landmark website. http://www.ornl.gov/hgmis/posters/chromosome/
Students then choose a disease to report on via a webpage. Their report included a short summary of the disease, the gene's location on the chromosome, the protein(s) affected, its means of inheritance,the DNA sequence and protein sequence of the wild type, the DNA sequence and protein sequence of the disease type, and then a conclusion describing the single event that caused the disease state (ie. translocation, frameshift mutation, point mutations, etc.)


IN-CLASS ACTIVITIES -- activities and discussions within synchronous classes
Students designed a website in order to display their research and findings.




  DISCUSS Go to Topgo to top
Dialogues, Discussions, and Presentations
FACE-TO-FACE DIALOGUES
Students reviewed other students' websites for feedback before publishing. Numerous discussions occurred between students and the teacher and visiting scientist as to the mechanisms of inheritance for their particular disease.


PRESENTATIONS
Student websites were published online to be viewed by their peers and other interested parties.

  REFLECT Go to Topgo to top
Assessment, Related Questions, and Story of the Unit
ASSESSMENT

To view the grading rubric....
http://www.district86.k12.il.us/central/faculty/k-gabric/cdiseaseRubric.htm



STORY OF THE UNIT -- How did it go? The project went very well. In the future though, there will be deadlines along the way for students to meet. Too many left their research for the very end and were not prepared to build their webpage during classtime. I would not suggest using Biology Workbench for this project. It was too difficult to find the correct sequences for comparison. There were too many variants on many genes that did not cause the disease, and students could not distinguish the correct sequence to use.

To view the Best of the Best go to
http://www.district86.k12.il.us/central/faculty/k-gabric/GeneticProject.htm

To view all student projects go to
http://www.district86.k12.il.us/central/departments/science/Project/
RESPONSES FROM OTHERS (teachers)

Uploaded Files:
GeneticProject.htm
cdiseaseRubric.htm
microsoft_frontpage.htm

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